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Here the list of papers written by MBLab Researchers and related to MBLab Activities.
| Authors |
Title |
Journal/Conference |
| P. Leo, F. Grieco, G. Mulè | Full Value Tracing of a wine chain | Poster at the 2° International Symposium "MICRO SAFETY WINE". Martina Franca (Italy) |
| M. Biba, F. Esposito, M. Accetturo, T.M. Creanza, C. Santoro, P. Leo | Non Syndromic Hereditary Hearing Loss: Gene Prioritization Based on Textual Approach | Proceeding of Logic-based approaches in Bioinformatics Workshop. Satellite workshop of the AI*IA 2009: International Conference of the Italian Association for Artificial Intelligence. 12 December 2009, Reggio Emilia (Italy) |
| C. Loglisci, A. Falcone, B. Balech, P. Leo | First-Order Frequent Pattern Mining for Analyzing Complex Phenotype Data | Proceeding of Logic-based approaches in Bioinformatics Workshop. Satellite workshop of the AI*IA 2009: International Conference of the Italian Association for Artificial Intelligence. 12 December 2009, Reggio Emilia (Italy) |
| Susca A. Mule’ G., Baker, S. he | Aspergillus carbonarius genome: Analysis of potential secondary metabolite biosynthetic gene clusters | . Poster 25th Fungal Genetics Conference at Asilomar March 17-22 |
| Teresa M.A. Basile, Laura Caponetti, Giovanna Castellano, Gianluca Sforza | A Texture-based Image Processing Approach for the Description of Human Oocyte Cytoplasm | MeMeA'09 - Special Issue of IEEE Transactions on Instrumentation and Measurement (submitted) |
| L. Caponetti, G. Castellano, V. Corsini, and G. Sforza | Multiresolution texture analysis for human oocyte cytoplasm description | Proceedings of the IEEE International Workshop on Medical Measurements and Applications (MeMeA’09). pp. 150–155. 2009 |
| S. Ferilli, T.M.A. Basile, M. Biba, N. Di Mauro, F. Esposito | A General Similarity Framework for Horn Clause Logic | Fundamenta Informaticae Journal, 90(1-2): 43-66, IOS Press, 2009 |
| Antonio Turi, Corrado Loglisci, Eliana Salvemini, Giorgio Grillo, Donato Malerba and Domenica D’Elia | Computational annotation of UTR cis-regulatory modules through Frequent Pattern Mining | BMC Bioinformatics 16 Giugno 2009, Volume 10 |
| Loglisci, Eliana Salvemini, Antonio Turi, Giorgio Grillo, Domenica D’Elia, Donato Malerba | Mining Frequent Patterns of Biological Spaced Motifs | SEBD 2009, the Italian Symposium on Advanced Database Systems, 22-24 Giugno 2009 a Camogli, Genova, Italy. |
| M. Biba, S. Ferilli, F. Esposito | Modelling (Bio)Logical Sequences through Markov Logic Networks | International Joint Conference Intelligent Information Systems (IIS 2009), Recent Advances in Intelligent Infomation Systems, ISBN 978-83-60434-59-8, Warsaw, 2009. |
| M.Biba, S. Ferilli and F. Esposito | Efficient MAP Inference for Statistical Relational Models through Hybrid Metaeuristics | 18th International Symposium on Methodologies for Intelligent Systems, Prague, 2008 |
| F. Esposito, M. Biba, S. Ferilli | Intelligent Text Processing Techniques for Textual-Profile Gene Characterization | 6th International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics, (CIBB'09), Genova, 2009 |
| S. Ferilli, M. Biba, T.M.A. Basile, F. Esposito | Qualitative and Quantitative Keyword Extraction Methods with Document Layout Analysis | 5th Italian Research Conference on Digital Libraries, (IRCDL'09), DELOS: an Association for Digital Libraries 2009 |
| L. Di Pace, P. Leo, A. Colao, F. Esposito, G. Pesole, C. Saccone, A. Visconti. | The Molecular Biodiversity Laboratory (MBLab): a private‐public research initiative involved in the study and the use of molecular biodiversity for industrial applications | Proceeding of E-Biosphere Conference 09. June 2009. London UK |
| P. Basile, A. Caputo, M. de Gemmis, A. L. Gentile, P. Lops, and G. Semeraro | Improving Ranked Keyword Search with SENSE: SEmantic N-levels Search Engine | In Communications of SIWN (formerly: System and Information Sciences Notes), 5:39-45, August 2008. ISSN 1757-4439 (Print) 1757-4447 (CD-ROM). SIWN: The Systemics and Informatics World Network. |
| M. Biba, S. Ferilli, F. Esposito | Stochastic Markov Logic Networks for (Bio)Logical Sequence Modelling. | In Proceedings of AI*IA Workshop on Data Mining and Bioinformatics, Cagliari, 13 September, 2008 |
| D'Elia D, Loglisci C, Salvemini E., Turi A, Malerba D | Higher Order Mining of Biological Motifs. | Intelligenza Artificiale e Scienze della vita. AI*IA 2008 - 10° Convegno Associazione Italiana per l'Intelligenza Artificiale |
| Antonio Turi, Corrado Loglisci, Eliana Salvemini, Giorgio Grillo, Donato Malerba and Domenica D'Elia | Computational annotation of UTR cis-regulatory modules through Frequent Pattern Mining | European Molecular Biology network (EMBNet) Conference 2008 |
| S. Ferilli, M. Biba, T. M.A. Basile, N. Di Mauro, and F. Esposito | k-Nearest Neighbor Classification on First-Order Logic Descriptions | Proceedings of the 4th International Workshop on Mining Complex Data - MCD 2008 (In conjunction with IEEE ICDM 2008). |
| M. Biba, S. Ferilli, F. Esposito | Structure Learning of Markov Logic Networks through Iterated Local Search | Proceedings of 18th European Conference on Artificial Intelligence (ECAI 2008), Patras, Greece, IOS Press, 2008 |
| S. Ferilli, N. Di Mauro, T. M.A. Basile, M. Biba, F. Esposito | Generalization-based Similarity for Conceptual Clustering | In Proceedings of the 3rd International Workshop on Mining Complex Data - MCD'07 at ECML/PKDD, LNAI, Vol. 4944, 13-26, Springer, 2008 |
|
M. Biba, S. Ferilli, N. Di Mauro & T.M.A. Basile |
A Hybrid Symbolic-Statistical Approach to Modeling Metabolic Networks |
In Knowledge-Based Intelligent Information and Engineering Systems, B. Apolloni, R.J. Howlett, L. Jain (Eds.), Part I, 132-139, Lecture Notes in Artificial Intelligence 4692, ISBN 978-3-540-74817-5, ISSN 0302-9743, Springer:Berlin, 2007 |
|
M. Biba, F. Esposito, S. Ferilli, T.M.A. Basile & N. Di Mauro |
Multi-class Protein Fold Recognition through a Symbolic-Statistical Framework |
In Applications of Fuzzy Sets Theory, F. Masulli, S. Mitra, G. Pasi (Eds.), 666-673, Lecture Notes in Artificial Intelligence 4578, ISBN 978-3-540-73399-7, ISSN 0302-9743, Springer:Berlin, 2007 |
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M. Biba, F. Esposito, S. Ferilli, N. Di Mauro & T.M.A. Basile |
Mining Time-series Sequences of Reactions for Biologically Active Patterns in Metabolic Pathways |
Proceedings of the Fifteenth Italian Symposium on Advanced Database Systems. Michelangelo Ceci, Donato Malerba, Letizia Tanca (Eds.), 40-51, SEBD 2007, 17-20 June 2007, Torre Canne, Fasano, BR, Italy. 2007, ISBN 978-88-902981-0-3 |
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Santamaria M, La nave C., Vicario S. and Saccone C. |
Variability of the mitochondrial genome in mammals at the |
Biol. Chem., 388, pp. 943–946 |
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S. Battagliero, G. Puglia, S. Vicario, F. Rubino, G. Scioscia and P. Leo |
An Efficient Algorithm for Approximating Geodesic Distances in Tree Space |
IEEE/ACM Transactions on Computational Biology and Bioinformatics |
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Accetturo M, Creanza TM, Giordano A, Leo P, Santoro C, Scioscia G, Tria G, Vaccina A |
Finding new genes for non-syndromic hearing loss through an in silico prioritization study |
BITS Annual Meeting 2010 |
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Colella R, Quinto V, Vaccina A, Scioscia G, Leo P |
Renewing bioinformatics workflow system by using a Web 2.0 approach |
BITS Annual Meeting 2010 |
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Balech B, Creanza TM, Di Tota F, Scioscia G, Leo P |
BITS Annual Meeting 2010 |
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Battagliero S, Puglia G, Vicario S, Rubino F, Scioscia G, Leo P |
Efficient computation of a geodesic distance approximation in phylogenetic tree space |
BITS Annual Meeting 2010 |
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Di Tota F, Balech B, Lobefaro A, Falcone A, Vaccina A, Scioscia G, Leo P |
Viral-KB: an integrated Knowledge-Base to support Viral molecular biodiversity studies |
BITS Annual Meeting 2010 |
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Leo P, Scioscia G, Accetturo M, Creanza TM, Santoro C, Tria G, Giordano A, Battagliero S |
Non syndromic Hereditary Hearing Loss (HHL) bioinformatic workbench |
BITS Annual Meeting 2010 |
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Pannarale P, Scioscia G, Rubino F, Leo P, Pappadà G, D’Elia D, Grillo G, Vicario S, De Caro G, Gisel A, Mulè G, Susca A, Catalano D, Licciulli F |
BITS Annual Meeting 2010 |
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Pappadà G, Santamaria M, Scioscia G, Quinto V, Leo P |
BITS Annual Meeting 2010 |
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Vaccina A, Alviggi C, Pivonello R, Colao A, Cariati F, Doronzo V, Leo P |
BITS Annual Meeting 2010 |
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Vicario S, Calabrese C, Santamaria M, Simone D, Attimonelli M |
Algorithms for tagging and recognizing a large set of samples in highly parallel 454 sequencing |
BITS Annual Meeting 2010 |
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Tulipano A, Navarro B, Di Serio F, Flores R, Gisel A |
Sequence analysis of deep sequencing data of viroid-derived small RNAs in plants |
BITS Annual Meeting 2010 |
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Picardi E, Horner DS, Chiara M, Schiavon R, Valle G, Pesole G |
Large scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing |
BITS Annual Meeting 2010 |
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Licciulli F, Caratozzolo FM, Cornacchia S, D’Elia D, D’Erchia AM, Fosso B, Grillo G, Liuni S, Mangiulli M, Manzari C, Mignone F, Paluscio AM, Picardi E, Sbisà, Tullo A, Pesole G |
A bioinformatics workflow for the analysis of transcriptome data generated by deep-sequencing |
BITS Annual Meeting 2010 |
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Ceci M, Loglisci C, Salvemini E, Grillo G, D’Elia D, Malerba D |
Mining spatial association rules of multiple co-occurring motifs to discover cis-regulatory modules |
BITS Annual Meeting 2010 |
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Catalano D, Finetti-Sialer MM |
In-silico microRNAs analysis from Cartamus and Cynara spp. EST datasets |
BITS Annual Meeting 2010 |
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Piredda R, Attimonelli M, Bellarosa R, Schirone B, Simeone MC |
Prospects of barcoding the Italian wild dendroflora: lights and shadows |
BITS Annual Meeting 2010 |
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Grillo G, Licciulli F, Catalano D |
BITS Annual Meeting 2010 |
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Gallo A, Baker SE, Mulè G, Susca A, Logrieco A, Perrone G |
BITS Annual Meeting 2010 |
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M. Accetturo, T.M. Creanza, C. Santoro, G. Tria, A. Giordano, S. Battagliero, A. Vaccina, G. Scioscia, P. Leo |
Finding new genes for non-syndromic hearing loss through an in silico prioritization study. |
PLoS ONE |
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M. Accetturo, T.M. Creanza, A. Giordano, P. Leo, C. Santoro, G. Scioscia, G. Tria, A. Vaccina. |
A semantic-based functional gene distance to prioritize genes associated with Non-Syndromic Hereditary Hearing Loss |
14th Human Genome Meeting (HGM) 2010. 18-21 May 2010, Le Corum, Montpellier, France |
| A. Giordano, S.Battagliero, Gaetano Scioscia, Pietro Leo. | An effcient pathology-based Semantic Information Seeking system of biomedical literature | EMMIT@ 6th International Conference - Split, Croatia September 26 -28, 2010 |